PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0043s0010.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family Trihelix
Protein Properties Length: 554aa    MW: 59990.1 Da    PI: 4.3623
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0043s0010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix62.69.2e-20352437181
             trihelix   1 rWtkqevlaLiearremeerlrrgk.......lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpy 81 
                          rWt++e+ +L++++r+++e++r+++       ++  +W+++s++++++g+ r + qC+++w+nl+ ++kki+++ k   s+++s +++
  Mapoly0043s0010.1.p 352 RWTREETAVLLAGKRKRDEEIRSQQsgskfalSATERWDSISNHCKAHGVDRDAHQCRKRWSNLAADFKKIRTWHKM--SGVESYWSM 437
                          8*********************876677788899****************************************997..677777765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.98E-5350418IPR009057Homeodomain-like
PfamPF138379.7E-12351435No hitNo description
Gene3DG3DSA:1.10.10.604.1E-5351416IPR009057Homeodomain-like
CDDcd122031.35E-15351423No hitNo description
PROSITE profilePS500907.608352416IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 554 aa     Download sequence    Send to blast
MEESEGVVED GIQRPTTTTT TTTTTTTTTS LGDGECDESS VVQEPKKKKQ KKNGSFRAST  60
TKKRRCSDGV EGFAGGLAGG VGSILKEHDE DEEDEDDDDD DASDEPEQVQ FYIAVDGDGD  120
GDVDADAEHD GCWNGSEGAA GGGGGAGAAK DLRIEIPHSV PTSEVVETTT TTTTENEDDE  180
DDEDDEDGEG DVIPEFDPDH KGHSLFTEEL RAAVEEGSAL QLPPMMAVMD SHFPSDEEQL  240
QQQLLLMDGS KDAVHVNGGA LQGQVPLPLP PLATVTPSTN TTYEGLNEHL DVIAFKIYSA  300
LQQANSHPPA VSSQAGEGDG HYQQLVDQEQ GGDKNHAAGG IDEGERTPRH PRWTREETAV  360
LLAGKRKRDE EIRSQQSGSK FALSATERWD SISNHCKAHG VDRDAHQCRK RWSNLAADFK  420
KIRTWHKMSG VESYWSMRGD SRRKNKLPGS FDPEVYADME ATCDSNPHRK RKLVPMAGTA  480
EDVDDHQHDP LASVLESSGR AMQAALARNI QAQIEAHNQN SELDRNQRKE QGDNLVGVLG  540
LLADSLAKIA AKM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14664KKKQKKNGSFRASTTKKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP17471336
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.14e-33Trihelix family protein